PIMMS Logo

User Guide

  • Installation
  • Overview
  • Input files
  • Restart files
  • Output files
  • Keyword reference

Moves

  • Moves

Advanced Features

  • Advanced features
  • Quench / simulated annealing
  • Freeze files
  • Parallelization
  • Temperature-switch Monte Carlo (TSMMC)
  • Custom analysis
  • Reference ensembles & other advanced controls

Analysis (lemonade)

  • Analysis with lemonade
  • Loading a trajectory
  • The object hierarchy
  • Conformational analysis
  • Phase separation & droplet physics
  • API reference

Development

  • Development / API reference
PIMMS
  • Overview: module code

All modules for which code is available

  • pimms.acceptance
  • pimms.analysis_IO
  • pimms.analysis_structures
  • pimms.data_structures
  • pimms.energy
  • pimms.keyfile_parser
  • pimms.lattice_analysis_utils
  • pimms.lattice_utils
  • pimms.lemonade._load
  • pimms.lemonade.cluster
  • pimms.lemonade.frame
  • pimms.lemonade.phase_separation
  • pimms.lemonade.polymer
  • pimms.lemonade.surface_tension
  • pimms.lemonade.trajectory
  • pimms.parameterfile_parser
  • pimms.restart
  • pimms.simulation

© Copyright 2016-2026, Alex Holehouse & Ryan Emenecker (www.holehouse.wustl.edu).

Built with Sphinx using a theme provided by Read the Docs.