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User Guide

  • Installation
  • Overview
  • Input files
  • Restart files
  • Output files
  • Keyword reference

Moves

  • Moves

Advanced Features

  • Advanced features
  • Quench / simulated annealing
  • Freeze files
  • Parallelization
  • Temperature-switch Monte Carlo (TSMMC)
  • Custom analysis
  • Reference ensembles & other advanced controls

Analysis (lemonade)

  • Analysis with lemonade
  • Loading a trajectory
  • The object hierarchy
  • Conformational analysis
  • Phase separation & droplet physics
  • API reference

Development

  • Development / API reference
PIMMS
  • Python Module Index

Python Module Index

p
 
p
- pimms
    pimms.acceptance
    pimms.analysis_IO
    pimms.analysis_structures
    pimms.chain
    pimms.chainTSMMC
    pimms.data_structures
    pimms.energy
    pimms.keyfile_parser
    pimms.lattice
    pimms.lattice_analysis_utils
    pimms.lattice_utils
    pimms.lemonade.phase_separation
    pimms.lemonade.surface_tension
    pimms.moves
    pimms.parameterfile_parser
    pimms.restart
    pimms.simulation

© Copyright 2016-2026, Alex Holehouse & Ryan Emenecker (www.holehouse.wustl.edu).

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